Index

_

__add__() (molmass.Formula method) __bool__() (tifffile.COMPRESSION method) (tifffile.PREDICTOR method) (tifffile.RESUNIT method) (tifffile.TiffPages method) (tifffile.TiffSeries method) __call__() (czifile.CziImage method) (czifile.CziScenes method) (liffile.LifImageFrames method) (tifffile.TiffSeries method) __contains__() (tifffile.TiffTagRegistry method) (tifffile.TiffTags method) __delitem__() (tifffile.TiffTagRegistry method) (tifffile.TiffTags method) __eq__() (roifile.ImagejRoi method) (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrStore method) (tifffile.zarr.ZarrTiffStore method) __getattr__() (tifffile.TiffFile method) __getitem__() (czifile.CziScenes method) (lfdfiles.GlobalsAscii method) (lfdfiles.GlobalsLif method) (lfdfiles.SimfcsJrn method) (lfdfiles.VistaIfi method) (liffile.LifImageFrames method) (liffile.LifImageSeries method) (liffile.LifTileScanInfo method) (obffile.ObfStackSequence method) (tifffile.TiffPageSeries method) (tifffile.TiffSeries method) (tifffile.TiffTagRegistry method) (tifffile.TiffTags method) __hash__() (roifile.ImagejRoi method) (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrStore method) (tifffile.zarr.ZarrTiffStore method) __init__() (ptufile.PtuWriter method) __iter__() (czifile.CziImageChunks method) (czifile.CziScenes method) (lfdfiles.GlobalsLif method) (lfdfiles.LfdFileSequence method) (lfdfiles.SimfcsGpSeries method) (lfdfiles.SimfcsJrn method) (liffile.LifImageFrames method) (tifffile.FileSequence method) (tifffile.TiffPageSeries method) (tifffile.TiffSequence method) (tifffile.TiffSeries method) (tifffile.TiffTagRegistry method) (tifffile.TiffTags method) __len__() (czifile.CziImageChunks method) (czifile.CziScenes method) (lfdfiles.GlobalsLif method) (lfdfiles.SimfcsJrn method) (liffile.LifImageFrames method) (liffile.LifTileScanInfo method) (tifffile.FileCache method) (tifffile.TiffPages method) (tifffile.TiffPageSeries method) (tifffile.TiffSeries method) (tifffile.TiffTagRegistry method) (tifffile.TiffTags method)

__mul__() (molmass.Formula method) __new__() (lfdfiles.BioradPic static method) (lfdfiles.Ccp4Map static method) (lfdfiles.FlieOut static method) (lfdfiles.FliezDb2 static method) (lfdfiles.FliezI16 static method) (lfdfiles.FlimageBin static method) (lfdfiles.FlimfastFlif static method) (lfdfiles.GlobalsAscii static method) (lfdfiles.GlobalsLif static method) (lfdfiles.LfdFile static method) (lfdfiles.RawPal static method) (lfdfiles.SimfcsB64 static method) (lfdfiles.SimfcsBh static method) (lfdfiles.SimfcsBhz static method) (lfdfiles.SimfcsBin static method) (lfdfiles.SimfcsCyl static method) (lfdfiles.SimfcsFit static method) (lfdfiles.SimfcsI64 static method) (lfdfiles.SimfcsInt static method) (lfdfiles.SimfcsIntPhsMod static method) (lfdfiles.SimfcsJrn static method) (lfdfiles.SimfcsR64 static method) (lfdfiles.SimfcsRef static method) (lfdfiles.SimfcsVpl static method) (lfdfiles.SimfcsVpp static method) (lfdfiles.SimfcsZ64 static method) (lfdfiles.Vaa3dRaw static method) (lfdfiles.VistaIfi static method) (lfdfiles.VistaIfli static method) (lfdfiles.VistaTdflim static method) (lfdfiles.VoxxMap static method) __new_member__() (czifile.CziCompressionType method) (czifile.CziContentFileType method) (czifile.CziPixelType method) (czifile.CziSegmentId method) __rmul__() (molmass.Formula method) __setitem__() (tifffile.TiffTags method) __str__() (czifile.CziCompressionType method) (tifffile.OmeXml method) (tifffile.Timer method) __sub__() (molmass.Formula method) _TIFF (class in tifffile)

A

acquisition_time (ptufile.PtuFile property) active_channels (ptufile.PtuFile property) add() (tifffile.TiffTagRegistry method) (tifffile.TiffTags method) addimage() (tifffile.OmeXml method) ADOBE_DEFLATE (tifffile.COMPRESSION attribute) AIVIA (liffile.LifMemoryBlockType attribute) ALT_JPEG (tifffile.COMPRESSION attribute) analyze() (in module molmass) andor_metadata (tifffile.TiffFile property) andor_tags (tifffile.TiffPage property) ANGLE (roifile.ROI_TYPE attribute) ANNOTATION (oirfile.METADATA attribute) APERIO_JP2000_RGB (tifffile.COMPRESSION attribute) APERIO_JP2000_YCBC (tifffile.COMPRESSION attribute) ARROW (roifile.ROI_SUBTYPE attribute) asarray() (czifile.CziFile method) (czifile.CziImage method) (lfdfiles.BioradPic method) (lfdfiles.Ccp4Map method) (lfdfiles.FlieOut method) (lfdfiles.FliezDb2 method) (lfdfiles.FliezI16 method) (lfdfiles.FlimageBin method) (lfdfiles.FlimfastFlif method) (lfdfiles.GlobalsAscii method) (lfdfiles.GlobalsLif method) (lfdfiles.GlobalsLif.Record method) (lfdfiles.LfdFile method) (lfdfiles.LfdFileSequence method) (lfdfiles.RawPal method) (lfdfiles.SimfcsB64 method) (lfdfiles.SimfcsBh method) (lfdfiles.SimfcsBhz method) (lfdfiles.SimfcsBin method) (lfdfiles.SimfcsCyl method) (lfdfiles.SimfcsFit method) (lfdfiles.SimfcsGpSeries method) (lfdfiles.SimfcsI64 method) (lfdfiles.SimfcsInt method) (lfdfiles.SimfcsIntPhsMod method) (lfdfiles.SimfcsJrn method) (lfdfiles.SimfcsR64 method) (lfdfiles.SimfcsRef method) (lfdfiles.SimfcsVpl method) (lfdfiles.SimfcsVpp method) (lfdfiles.SimfcsZ64 method) (lfdfiles.Vaa3dRaw method) (lfdfiles.VistaIfi method) (lfdfiles.VistaIfli method) (lfdfiles.VistaTdflim method) (lfdfiles.VoxxMap method) (liffile.LifFlimImage method) (liffile.LifImage method) (liffile.LifImageABC method) (liffile.LifImageFrames method) (netpbmfile.NetpbmFile method) (obffile.ObfStack method) (oiffile.OifFile method) (oirfile.OirFile method) (oirfile.OirReference method) (psdtags.PsdLayer method) (psdtags.PsdPatterns method) (tifffile.FileSequence method) (tifffile.TiffFile method) (tifffile.TiffFrame method) (tifffile.TiffPage method) (tifffile.TiffPageSeries method) (tifffile.TiffSequence method)

ASCII (tifffile.DATATYPE attribute) asdict() (molmass.Composition method) (molmass.Spectrum method) asimage() (czifile.CziDirectoryEntryDV method) (fbdfile.FbdFile method) askopenfilename() (in module tifffile) aspage() (tifffile.TiffFrame method) (tifffile.TiffPage method) ASSOCALPHA (tifffile.EXTRASAMPLE attribute) astrotiff_metadata (tifffile.TiffFile property) astuple() (molmass.Composition method) (molmass.CompositionItem method) (molmass.Spectrum method) (molmass.SpectrumEntry method) (tifffile.TiffTag method) astype() (in module tifffile) asxarray() (czifile.CziFile method) (czifile.CziImage method) (liffile.LifFlimImage method) (liffile.LifImage method) (liffile.LifImageABC method) (liffile.LifImageFrames method) (obffile.ObfStack method) (oirfile.OirFile method) (oirfile.OirReference method) (tifffile.TiffFile method) (tifffile.TiffFrame method) (tifffile.TiffPage method) (tifffile.TiffPageSeries method) aszarr() (lfdfiles.LfdFileSequence method) (lfdfiles.SimfcsGpSeries method) (tifffile.FileSequence method) (tifffile.TiffFile method) (tifffile.TiffFrame method) (tifffile.TiffPage method) (tifffile.TiffPageSeries method) (tifffile.TiffSequence method) atoms (molmass.Formula property) attachment_directory (czifile.CziFile property) attachments() (czifile.CziFile method) (czifile.CziSubBlockSegmentData method) attrs (czifile.CziFile property) (czifile.CziImage property) (fbdfile.FbdFile property) (liffile.LifFile property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (obffile.ObfFile property) (obffile.ObfStack property) (oirfile.OirFile property) (oirfile.OirReference property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (sdtfile.SdtFile property) (tifffile.TiffPage property) (tifffile.TiffPageSeries property) autoname (roifile.ImagejRoi property) avs_metadata (tifffile.TiffFile property) axes (czifile.CziImage property) (netpbmfile.NetpbmFile property) (oiffile.OifFile property) (tifffile.TiffFrame property) (tifffile.TiffPageSeries property) AXES_CODES (tifffile._TIFF property) AXES_NAMES (tifffile._TIFF property)

B

bbox (czifile.CziImage property) BGR192COMPLEXFLOAT (czifile.CziPixelType attribute) BGR24 (czifile.CziPixelType attribute) BGR48 (czifile.CziPixelType attribute) BGR96FLOAT (czifile.CziPixelType attribute) BGRA32 (czifile.CziPixelType attribute) bif_metadata (tifffile.TiffFile property) BIG_BE (tifffile._TIFF property) BIG_LE (tifffile._TIFF property) BINARY (czifile.CziContentFileType attribute) binread() (in module ptufile) binwrite() (in module ptufile) BioradPic (class in lfdfiles)

bioradpic_write() (in module lfdfiles) bitspersample (oirfile.OirFile property) BLEACH_START (czifile.CziEventType attribute) BLEACH_STOP (czifile.CziEventType attribute) BLOCK (czifile.CziDimensionType attribute) block_measure_info() (sdtfile.SdtFile method) BlockNo (class in sdtfile) blocks_dict (psdtags.TiffImageResources property) BlockType (class in sdtfile) BMP (liffile.LifMemoryBlockType attribute) BYTE (tifffile.DATATYPE attribute) byteorder (psdtags.PsdFormat property) (psdtags.TiffImageSourceData property) (tifffile.TiffFile property)

C

c2pa_metadata (tifffile.TiffFile property) cache (tifffile.TiffPages property) cache_records (ptufile.PtuFile property) CAMERAIMAGE (oirfile.METADATA attribute) CAMERARAW (czifile.CziCompressionType attribute) Ccp4Map (class in lfdfiles) ccp4map_write() (in module lfdfiles) CENTIMETER (tifffile.RESUNIT attribute) CFA (tifffile.PHOTOMETRIC attribute) CHANNEL (czifile.CziDimensionType attribute) channel_indices (lfdfiles.VistaIfi property) (lfdfiles.VistaIfli property) channels (czifile.CziImage property) (oirfile.OirFile property) charge (molmass.Formula property) child_images (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) children (liffile.LifFile property) chunked (tifffile.TiffFrame property) (tifffile.TiffPage property) CHUNKMODE (class in tifffile) chunks (tifffile.TiffFrame property) (tifffile.TiffPage property) chunks() (czifile.CziImage method) (in module dnacurve) CIRCLE (roifile.ROI_POINT_TYPE attribute) CLASSIC_BE (tifffile._TIFF property) CLASSIC_LE (tifffile._TIFF property) clear() (tifffile.FileCache method) clock() (tifffile.Timer static method) close() (czifile.CziFile method) (fbdfile.FbdFile method) (lfdfiles.BioradPic method) (lfdfiles.Ccp4Map method) (lfdfiles.FlieOut method) (lfdfiles.FliezDb2 method) (lfdfiles.FliezI16 method) (lfdfiles.FlimageBin method) (lfdfiles.FlimfastFlif method) (lfdfiles.GlobalsAscii method) (lfdfiles.GlobalsLif method) (lfdfiles.LfdFile method) (lfdfiles.LfdFileSequence method) (lfdfiles.RawPal method) (lfdfiles.SimfcsB64 method) (lfdfiles.SimfcsBh method) (lfdfiles.SimfcsBhz method) (lfdfiles.SimfcsBin method) (lfdfiles.SimfcsCyl method) (lfdfiles.SimfcsFit method) (lfdfiles.SimfcsGpSeries method) (lfdfiles.SimfcsI64 method) (lfdfiles.SimfcsInt method) (lfdfiles.SimfcsIntPhsMod method) (lfdfiles.SimfcsJrn method) (lfdfiles.SimfcsR64 method) (lfdfiles.SimfcsRef method) (lfdfiles.SimfcsVpl method) (lfdfiles.SimfcsVpp method) (lfdfiles.SimfcsZ64 method) (lfdfiles.Vaa3dRaw method) (lfdfiles.VistaIfi method) (lfdfiles.VistaIfli method) (lfdfiles.VistaTdflim method) (lfdfiles.VoxxMap method) (liffile.LifFile method) (netpbmfile.NetpbmFile method) (obffile.ObfFile method) (oiffile.CompoundFile method) (oiffile.FileSystemAbc method) (oiffile.OibFileSystem method) (oiffile.OifFile method) (oiffile.OifFileSystem method) (oirfile.OirFile method) (oirfile.PoirFile method) (ptufile.PhuFile method) (ptufile.PqFile method) (ptufile.PtuFile method) (ptufile.PtuWriter method) (sdtfile.SdtFile method) (tifffile.FileCache method) (tifffile.FileHandle method) (tifffile.FileSequence method) (tifffile.TiffFile method) (tifffile.TiffSequence method) (tifffile.TiffWriter method) (tifffile.zarr.ZarrTiffStore method) closed (czifile.CziFile property) (fbdfile.FbdFile property) (liffile.LifFile property) (obffile.ObfFile property) (oirfile.OirFile property) (oirfile.PoirFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (sdtfile.SdtFile property) (tifffile.FileHandle property)

colormap (tifffile.TiffPage property) colortype (oirfile.OirFile property) comment (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) commonpath() (lfdfiles.LfdFileSequence method) (lfdfiles.SimfcsGpSeries method) (tifffile.FileSequence method) (tifffile.TiffSequence method) complementary() (in module dnacurve) COMPLEX (tifffile.DATATYPE attribute) COMPLEXIEEEFP (tifffile.SAMPLEFORMAT attribute) COMPLEXINT (tifffile.SAMPLEFORMAT attribute) composite (roifile.ImagejRoi property) Composition (class in molmass) composition() (molmass.Formula method) CompositionItem (class in molmass) CompoundFile (class in oiffile) compress() (in module psdtags) COMPRESSION (class in tifffile) compression (czifile.CziImage property) (tifffile.TiffFrame property) COMPRESSORS (tifffile._TIFF property) compute_encoded_size() (tifffile.zarr.Tiff method) CONTI (ptufile.PhuMeasurementMode attribute) CONTIG (tifffile.PLANARCONFIG attribute) convert2tiff() (in module lfdfiles) coord_offsets (czifile.CziImage property) (oirfile.OirFile property) (oirfile.OirReference property) (tifffile.TiffPageSeries property) coord_scales (czifile.CziImage property) (oirfile.OirFile property) (oirfile.OirReference property) (tifffile.TiffPageSeries property) coord_units (czifile.CziImage property) (oirfile.OirFile property) (oirfile.OirReference property) (tifffile.TiffPageSeries property) coordinates() (roifile.ImagejRoi method) coords (czifile.CziImage property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (liffile.LifImageFrames property) (obffile.ObfStack property) (oirfile.OirFile property) (oirfile.OirReference property) (ptufile.PtuFile property) (tifffile.TiffFrame property) (tifffile.TiffPage property) (tifffile.TiffPageSeries property) create_output() (in module tifffile) CROSS (roifile.ROI_POINT_TYPE attribute) csv() (dnacurve.CurvedDNA method) CurvedDNA (class in dnacurve) CZEVL (czifile.CziContentFileType attribute) CZEXP (czifile.CziContentFileType attribute) CZFBMX (czifile.CziContentFileType attribute) CZFOC (czifile.CziContentFileType attribute) CZHWS (czifile.CziContentFileType attribute) CZI (czifile.CziContentFileType attribute) CziAttachmentDirectorySegmentData (class in czifile) CziAttachmentEntryA1 (class in czifile) CziAttachmentSegmentData (class in czifile) CziCompressionType (class in czifile) CziContentFileType (class in czifile) CziDeletedSegmentData (class in czifile) CziDimensionEntryDV1 (class in czifile) CziDimensionType (class in czifile) CziDirectoryEntryDV (class in czifile) CziEventListEntry (class in czifile) CziEventType (class in czifile) CziFile (class in czifile) czifile (czifile.CziSegment property) czifile.__version__ (in module czifile) czifile.CONVERT_PIXELTYPE (in module czifile) CziFileError (class in czifile) CziFileHeaderSegmentData (class in czifile) CziImage (class in czifile) CziImageChunks (class in czifile) CziMetadataSegmentData (class in czifile) CziPixelType (class in czifile) CziPyramidType (class in czifile) CziScenes (class in czifile) CziSegment (class in czifile) CziSegmentData (class in czifile) CziSegmentId (class in czifile) CziSegmentNotFoundError (class in czifile) CziSubBlockDirectorySegmentData (class in czifile) CziSubBlockSegmentData (class in czifile) CziUnknownSegmentData (class in czifile) CZLUT (czifile.CziContentFileType attribute) CZMVM (czifile.CziContentFileType attribute) CZPML (czifile.CziContentFileType attribute) CZTIMS (czifile.CziContentFileType attribute)

D

data (psdtags.PsdThumbnailBlock property) data() (czifile.CziAttachmentSegmentData method) (czifile.CziMetadataSegmentData method) (czifile.CziSegment method) (czifile.CziSubBlockSegmentData method) DATA_DTYPES (tifffile._TIFF property) DATA_FORMATS (tifffile._TIFF property) data_offset (czifile.CziSegment property) dataformat (tifffile.TiffTag property) dataframe() (molmass.Composition method) (molmass.Spectrum method) dataoffset (tifffile.TiffPageSeries property) DATATYPE (class in tifffile) datetime (czifile.CziImage property) (liffile.LifFile property) (oirfile.OirFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (tifffile.TiffFrame property) (tifffile.TiffPage property) dc_ref() (lfdfiles.SimfcsFit method) decode (tifffile.TiffFrame property) (tifffile.TiffPage property) decode() (fbdfile.FbdFile method) (ptufile.numcodecs.Ptu method) (tifffile.numcodecs.Tiff method) decode_histogram() (ptufile.PtuFile method) decode_image() (ptufile.PtuFile method) decode_records() (ptufile.PtuFile method) decoder() (czifile.CziCompressionType static method) decoder_settings (fbdfile.FbdFile property) decompress() (in module psdtags) DECOMPRESSORS (tifffile._TIFF property) delete() (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrStore method) (tifffile.zarr.ZarrTiffStore method) DELETED (czifile.CziSegmentId attribute) DEPTH (czifile.CziDimensionType attribute) description (molmass.Element property) (molmass.elements.Element property) dilution() (in module molmass) dims (czifile.CziImage property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (liffile.LifImageFrames property) (obffile.ObfStack property) (oirfile.OirFile property) (oirfile.OirReference property) (ptufile.PtuFile property) (tifffile.TiffFrame property) (tifffile.TiffPage property) (tifffile.TiffPageSeries property)

dinuc_window() (in module dnacurve) dinucleotide_matrix() (in module dnacurve) directory_entries (czifile.CziImage property) directory_entry_offset (czifile.CziSubBlockSegmentData property) direntry() (oiffile.CompoundFile method) dirname (czifile.CziFile property) (fbdfile.FbdFile property) (liffile.LifFile property) (obffile.ObfFile property) (oirfile.OirFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (sdtfile.SdtFile property) (tifffile.FileHandle property) dnacurve.__version__ (in module dnacurve) dnacurve.MAXLEN (in module dnacurve) dnacurve.MODELS (in module dnacurve) DOT (roifile.ROI_POINT_TYPE attribute) DOUBLE (tifffile.DATATYPE attribute) DOUBLE_HEADED (roifile.ROI_OPTIONS attribute) DRAW_OFFSET (roifile.ROI_OPTIONS attribute) drawoffset (roifile.ImagejRoi property) dtype (czifile.CziDirectoryEntryDV property) (czifile.CziImage property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (liffile.LifImageFrames property) (obffile.ObfStack property) (oiffile.OifFile property) (oirfile.OirFile property) (oirfile.OirReference property) (psdtags.PsdLayers property) (psdtags.PsdVirtualMemoryArray property) (ptufile.PtuFile property) (tifffile.TiffFrame property) dtype_name (tifffile.TiffTag property)

E

eer_metadata (tifffile.TiffFile property) eer_tags (tifffile.TiffPage property) eleconfig_dict (molmass.Element property) (molmass.elements.Element property) ELECTRON (in module molmass) (in module molmass.elements) electrons (molmass.Element property) (molmass.elements.Element property) Element (class in molmass) (class in molmass.elements) ELEMENTS (in module molmass) (in module molmass.elements) eleshells (molmass.Element property) (molmass.elements.Element property) ELLIPSE (roifile.ROI_SUBTYPE attribute) empirical (molmass.Formula property)

encode() (ptufile.numcodecs.Ptu method) (tifffile.numcodecs.Tiff method) ENHANCED (tifffile.FILETYPE attribute) enumarg() (in module tifffile) enumstr() (in module tifffile) epics_metadata (tifffile.TiffFile property) epics_tags (tifffile.TiffPage property) EVENTLIST (oirfile.METADATA attribute) exactmass (molmass.Element property) (molmass.elements.Element property) EXIF_TAGS (tifffile._TIFF property) exists() (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrTiffStore method) expanded (molmass.Formula property) extension (tifffile.FileHandle property) EXTRA_LARGE (roifile.ROI_POINT_SIZE attribute) EXTRASAMPLE (class in tifffile)

F

fbd_decode() (in module fbdfile) fbd_histogram() (in module fbdfile) fbd_to_b64() (in module fbdfile) FbdFile (class in fbdfile) fbdfile.__version__ (in module fbdfile) FbdFileError (class in fbdfile) fbf_read() (in module fbdfile) fbs_read() (in module fbdfile) fei_metadata (tifffile.TiffFile property) FILE (tifffile.CHUNKMODE attribute) FILE_EXTENSIONS (tifffile._TIFF property) file_positions() (czifile.CziAttachmentDirectorySegmentData static method) (czifile.CziSubBlockDirectorySegmentData static method) FileCache (class in tifffile) FileHandle (class in tifffile) filehandle (czifile.CziFile property) (czifile.CziSegment property) (fbdfile.FbdFile property) (liffile.LifFile property) (obffile.ObfFile property) (oirfile.OirFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (sdtfile.SdtFile property) (tifffile.TiffFile property) (tifffile.TiffWriter property) FileInfo (class in sdtfile) FILEINFO (oirfile.METADATA attribute) filename (czifile.CziAttachmentEntryA1 property) (czifile.CziFile property) (fbdfile.FbdFile property) (lfdfiles.BioradPic property) (lfdfiles.Ccp4Map property) (lfdfiles.FlieOut property) (lfdfiles.FliezDb2 property) (lfdfiles.FliezI16 property) (lfdfiles.FlimageBin property) (lfdfiles.FlimfastFlif property) (lfdfiles.GlobalsAscii property) (lfdfiles.GlobalsLif property) (lfdfiles.LfdFile property) (lfdfiles.RawPal property) (lfdfiles.SimfcsB64 property) (lfdfiles.SimfcsBh property) (lfdfiles.SimfcsBhz property) (lfdfiles.SimfcsBin property) (lfdfiles.SimfcsCyl property) (lfdfiles.SimfcsFit property) (lfdfiles.SimfcsI64 property) (lfdfiles.SimfcsInt property) (lfdfiles.SimfcsIntPhsMod property) (lfdfiles.SimfcsJrn property) (lfdfiles.SimfcsR64 property) (lfdfiles.SimfcsRef property) (lfdfiles.SimfcsVpl property) (lfdfiles.SimfcsVpp property) (lfdfiles.SimfcsZ64 property) (lfdfiles.Vaa3dRaw property) (lfdfiles.VistaIfi property) (lfdfiles.VistaIfli property) (lfdfiles.VistaTdflim property) (lfdfiles.VoxxMap property) (liffile.LifFile property) (obffile.ObfFile property) (oirfile.OirFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (sdtfile.SdtFile property) (tifffile.TiffFile property) fileno() (tifffile.FileHandle method) filepath (czifile.CziFile property) (fbdfile.FbdFile property) (liffile.LifFile property) (obffile.ObfFile property) (oirfile.OirFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (sdtfile.SdtFile property) FileRevision (class in sdtfile) files() (oiffile.CompoundFile method) (oiffile.FileSystemAbc method) (oiffile.OibFileSystem method) (oiffile.OifFileSystem method) files_missing (lfdfiles.LfdFileSequence property) (lfdfiles.SimfcsGpSeries property) (tifffile.FileSequence property) (tifffile.TiffSequence property) FileSequence (class in tifffile) filesize (czifile.CziFile property) (obffile.ObfFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property)

FileSystemAbc (class in oiffile) filetime() (in module oiffile) FILETYPE (class in tifffile) FILLORDER (class in tifffile) filtered_subblock_directory (czifile.CziFile property) find() (liffile.LifImageSeries method) (obffile.ObfStackSequence method) findall() (liffile.LifImageSeries method) (obffile.ObfStackSequence method) first (tifffile.TiffPages property) flags (tifffile.TiffFile property) (tifffile.TiffPage property) FlieOut (class in lfdfiles) FliezDb2 (class in lfdfiles) FliezI16 (class in lfdfiles) FlimageBin (class in lfdfiles) FLIMBEE (ptufile.PtuScannerType attribute) FlimfastFlif (class in lfdfiles) FLOAT (tifffile.DATATYPE attribute) FLOATINGPOINT (tifffile.PREDICTOR attribute) fluoview_metadata (tifffile.TiffFile property) flush() (tifffile.FileHandle method) format() (dnacurve.Sequence method) format_charge() (in module molmass) format_size() (in module tifffile) format_tree() (oiffile.CompoundFile method) Formula (class in molmass) formula (molmass.Formula property) FormulaError (class in molmass) frame() (liffile.LifImage method) frame_change_mask (ptufile.PtuFile property) frame_dims (liffile.LifImageFrames property) frame_shape (liffile.LifImageFrames property) frame_sizes (liffile.LifImageFrames property) frame_time (ptufile.PtuFile property) FRAMEPROPERTIES (oirfile.METADATA attribute) frames (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) frames() (fbdfile.FbdFile method) FREEHAND (roifile.ROI_TYPE attribute) FREELINE (roifile.ROI_TYPE attribute) frequency (liffile.LifFlimImage property) (ptufile.PtuFile property) from_dict() (tifffile.zarr.Tiff class method) from_elements() (in module molmass) from_fractions() (in module molmass) from_oligo() (in module molmass) from_peptide() (in module molmass) from_sequence() (in module molmass) from_string() (in module molmass) frombytes() (psdtags.PsdBoolean class method) (psdtags.PsdBytesBlock class method) (psdtags.PsdChannel class method) (psdtags.PsdColorBlock class method) (psdtags.PsdEmpty class method) (psdtags.PsdExposure class method) (psdtags.PsdFilterMask class method) (psdtags.PsdInteger class method) (psdtags.PsdKeyABC class method) (psdtags.PsdLayer class method) (psdtags.PsdLayerMask class method) (psdtags.PsdLayers class method) (psdtags.PsdMetadataSettings class method) (psdtags.PsdPascalStringBlock class method) (psdtags.PsdPascalStringsBlock class method) (psdtags.PsdPatterns class method) (psdtags.PsdReferencePoint class method) (psdtags.PsdResourceBlockABC class method) (psdtags.PsdSectionDividerSetting class method) (psdtags.PsdSheetColorSetting class method) (psdtags.PsdString class method) (psdtags.PsdStringBlock class method) (psdtags.PsdStringsBlock class method) (psdtags.PsdTextEngineData class method) (psdtags.PsdThumbnailBlock class method) (psdtags.PsdUnknown class method) (psdtags.PsdUserMask class method) (psdtags.PsdVersionBlock class method) (psdtags.PsdWord class method) (psdtags.TiffImageResources class method) (psdtags.TiffImageSourceData class method) (roifile.ImagejRoi class method) fromdata() (netpbmfile.NetpbmFile class method) fromfile() (obffile.ObfFileHeader class method) (obffile.ObfSiUnit class method) (obffile.ObfStackFooter class method) (obffile.ObfStackHeader class method) (roifile.ImagejRoi class method) (tifffile.TiffTag class method) frompoints() (roifile.ImagejRoi class method) fromtiff() (psdtags.TiffImageResources class method) (psdtags.TiffImageSourceData class method) fstat (tifffile.TiffFile property)

G

gcd (molmass.Formula property) gdal_metadata (tifffile.TiffFile property) gdal_structural_metadata (tifffile.TiffFile property) GenericT2 (ptufile.PtuRecordType attribute) GenericT3 (ptufile.PtuRecordType attribute) GEO_CODES (tifffile._TIFF property) GEO_KEYS (tifffile._TIFF property) geotiff_metadata (tifffile.TiffFile property) geotiff_tags (tifffile.TiffPage property) get() (czifile.CziPixelType static method) (liffile.LifImageFrames method) (tifffile.TiffPages method) (tifffile.TiffTagRegistry method) (tifffile.TiffTags method) (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrTiffStore method) get_partial_values() (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrStore method) (tifffile.zarr.ZarrTiffStore method) get_resolution() (tifffile.TiffFrame method) (tifffile.TiffPage method) getall() (tifffile.TiffTagRegistry method) (tifffile.TiffTags method)

glob() (oiffile.OifFile method) global_acquisition_time (ptufile.PtuFile property) global_frame_time (ptufile.PtuFile property) global_line_time (ptufile.PtuFile property) global_pixel_time (ptufile.PtuFile property) global_resolution (liffile.LifFlimImage property) (ptufile.PtuFile property) GlobalsAscii (class in lfdfiles) GlobalsLif (class in lfdfiles) GlobalsLif.Record (class in lfdfiles) GPS_TAGS (tifffile._TIFF property) GRAY16 (czifile.CziPixelType attribute) GRAY32 (czifile.CziPixelType attribute) GRAY32FLOAT (czifile.CziPixelType attribute) GRAY64 (czifile.CziPixelType attribute) GRAY64COMPLEXFLOAT (czifile.CziPixelType attribute) GRAY8 (czifile.CziPixelType attribute) guid (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) gvd_param (sdtfile.SetupBlock property)

H

hardware_features (ptufile.PtuFile property) has_lock (tifffile.FileHandle property) has_unknowns (psdtags.PsdLayer property) (psdtags.TiffImageSourceData property) hash (tifffile.TiffFrame property) (tifffile.TiffPage property) HEIGHT (czifile.CziDimensionType attribute) hexcolor() (roifile.ImagejRoi method) hexdump() (in module tifffile)

hill_sorted() (in module molmass) HISTOGRAM (ptufile.PhuMeasurementMode attribute) histogram_resolutions (ptufile.PhuFile property) histograms() (ptufile.PhuFile method) HORIZONTAL (tifffile.PREDICTOR attribute) HYBRID (roifile.ROI_POINT_TYPE attribute) HydraHarp2T2 (ptufile.PtuRecordType attribute) HydraHarp2T3 (ptufile.PtuRecordType attribute) HydraHarpT2 (ptufile.PtuRecordType attribute) HydraHarpT3 (ptufile.PtuRecordType attribute)

I

iccprofile (tifffile.TiffPage property) IEEEFP (tifffile.SAMPLEFORMAT attribute) IFD (tifffile.DATATYPE attribute) IFD8 (tifffile.DATATYPE attribute) ILLUMINATION (czifile.CziDimensionType attribute) IMAGE (ptufile.PtuMeasurementSubMode attribute) image (roifile.ImagejRoi property) IMAGE (roifile.ROI_SUBTYPE attribute) IMAGEDEFINITION (oirfile.METADATA attribute) imagej_description (tifffile.TiffPage property) imagej_description() (in module tifffile) imagej_metadata (tifffile.TiffFile property) imagej_metadata_tag() (in module tifffile) ImagejRoi (class in roifile) images (liffile.LifFile property) imread() (in module czifile) (in module liffile) (in module netpbmfile) (in module obffile) (in module oiffile) (in module oirfile) (in module ptufile) (in module tifffile) imsave() (in module netpbmfile) imshow() (in module tifffile) imwrite() (in module netpbmfile) (in module ptufile) (in module tifffile) INCH (tifffile.RESUNIT attribute) index (tifffile.TiffFrame property) (tifffile.TiffPage property) indica_metadata (tifffile.TiffFile property) indices() (tifffile.TiledSequence method) init_decode() (tifffile.TiffPage method) INT (tifffile.SAMPLEFORMAT attribute) INTEGRATING (ptufile.PhuMeasurementSubMode attribute) IOP_TAGS (tifffile._TIFF property) is_agilent (tifffile.TiffPage property) is_andor (tifffile.TiffPage property) is_appendable (tifffile.TiffFile property) is_astrotiff (tifffile.TiffPage property) is_avs (tifffile.TiffPage property) is_bgr (psdtags.PsdThumbnailBlock property) is_bidirectional (liffile.LifFlimImage property) (ptufile.PtuFile property) is_bif (tifffile.TiffPage property) is_bigtiff (tifffile.TiffFile property) (tifffile.TiffFormat property) is_c2pa (tifffile.TiffFile property) (tifffile.TiffPage property) is_contiguous (tifffile.TiffFrame property) (tifffile.TiffPage property) is_dng (tifffile.TiffPage property) is_downsampled (czifile.CziImage property) is_eer (tifffile.TiffPage property) is_epics (tifffile.TiffPage property) is_fei (tifffile.TiffPage property) is_file (tifffile.FileHandle property) is_final (tifffile.TiffFrame property) (tifffile.TiffPage property) is_flim (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) is_fluoview (tifffile.TiffPage property) is_frame (tifffile.TiffFrame property) (tifffile.TiffPage property) is_gdal (tifffile.TiffPage property) is_geotiff (tifffile.TiffPage property) is_image (ptufile.PtuFile property) is_imagej (tifffile.TiffPage property) is_indica (tifffile.TiffPage property)

is_jfif (tifffile.TiffPage property) is_lsm (tifffile.TiffPage property) is_mask (tifffile.TiffPage property) is_mdgel (tifffile.TiffFile property) (tifffile.TiffPage property) is_mediacy (tifffile.TiffPage property) is_memmappable (tifffile.TiffFrame property) (tifffile.TiffPage property) is_metaseries (tifffile.TiffPage property) is_micromanager (tifffile.TiffPage property) is_mmstack (tifffile.TiffFile property) is_mrc (tifffile.TiffPage property) is_multipage (tifffile.TiffPage property) (tifffile.TiffPages property) is_multiscales (tifffile.zarr.ZarrFileSequenceStore property) (tifffile.zarr.ZarrStore property) (tifffile.zarr.ZarrTiffStore property) is_ndpi (tifffile.TiffFormat property) (tifffile.TiffPage property) is_ndtiff (tifffile.TiffFile property) is_nih (tifffile.TiffPage property) is_nuvu (tifffile.TiffPage property) is_oib (oiffile.OifFile property) is_ome (tifffile.TiffPage property) is_philips (tifffile.TiffPage property) is_pilatus (tifffile.TiffPage property) is_planar (tifffile.StoredShape property) is_pyramid (czifile.CziImage property) is_pyramid_level (czifile.CziImage property) is_pyramidal (tifffile.TiffPageSeries property) is_qpi (tifffile.TiffPage property) is_reduced (tifffile.TiffPage property) is_scanimage (tifffile.TiffPage property) is_scn (tifffile.TiffPage property) is_sem (tifffile.TiffPage property) is_shaped (tifffile.TiffPage property) is_sinusoidal (liffile.LifFlimImage property) (ptufile.PtuFile property) is_sis (tifffile.TiffFile property) (tifffile.TiffPage property) is_stk (tifffile.TiffPage property) is_streak (tifffile.TiffPage property) is_subifd (tifffile.TiffFrame property) (tifffile.TiffPage property) is_subsampled (tifffile.TiffPage property) is_svs (tifffile.TiffFile property) (tifffile.TiffPage property) is_t3 (ptufile.PtuFile property) is_tiffep (tifffile.TiffPage property) is_tiled (tifffile.TiffPage property) (tifffile.TiledSequence property) is_tvips (tifffile.TiffPage property) is_uniform (tifffile.TiffFile property) is_upsampled (czifile.CziImage property) is_valid (tifffile.StoredShape property) is_virtual (tifffile.TiffFrame property) (tifffile.TiffPage property) is_vista (tifffile.TiffPage property) is_volumetric (tifffile.TiffPage property) isb64 (psdtags.PsdFormat property) Isotope (class in molmass) (class in molmass.elements) isotope (molmass.Formula property) items() (liffile.LifImageFrames method) (molmass.Composition method) (molmass.Spectrum method) (tifffile.TiffTagRegistry method) (tifffile.TiffTags method) itemsize (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (ptufile.PtuFile property)

J

JETRAW (tifffile.COMPRESSION attribute) join_charge() (in module molmass) JPEG (czifile.CziCompressionType attribute) (tifffile.COMPRESSION attribute) JPEG2000 (tifffile.COMPRESSION attribute) JPEG_2000_LOSSY (tifffile.COMPRESSION attribute) JPEGLL (czifile.CziCompressionType attribute)

JPEGXL (tifffile.COMPRESSION attribute) JPEGXL_DNG (tifffile.COMPRESSION attribute) JPEGXR (czifile.CziCompressionType attribute) (tifffile.COMPRESSION attribute) JPEGXR_NDPI (tifffile.COMPRESSION attribute) JPG (czifile.CziContentFileType attribute) (liffile.LifMemoryBlockType attribute)

K

keyframe (tifffile.TiffFrame property) (tifffile.TiffPage property) (tifffile.TiffPages property)

keys() (liffile.LifImageFrames method) (molmass.Composition method) (molmass.Spectrum method) (tifffile.TiffTags method)

L

LARGE (roifile.ROI_POINT_SIZE attribute) LERC (tifffile.COMPRESSION attribute) levels (czifile.CziImage property) LfdFile (class in lfdfiles) LfdFileError (class in lfdfiles) lfdfiles.__version__ (in module lfdfiles) lfdfiles.FILE_EXTENSIONS (in module lfdfiles) LfdFileSequence (class in lfdfiles) LIF (liffile.LifFileType attribute) lifetime() (lfdfiles.VistaTdflim method) LIFEXT (liffile.LifFileType attribute) LifFile (class in liffile) liffile.__version__ (in module liffile) liffile.FILE_EXTENSIONS (in module liffile) LifFileError (class in liffile) LifFileType (class in liffile) LifFlimImage (class in liffile) LifImage (class in liffile) LifImageABC (class in liffile) LifImageFrames (class in liffile) LifImageSeries (class in liffile) LifMemoryBlock (class in liffile) LifMemoryBlockType (class in liffile) LifTileScanInfo (class in liffile) LINE (ptufile.PtuMeasurementSubMode attribute) (roifile.ROI_TYPE attribute) line_roi (oirfile.OirReference property) line_start_mask (ptufile.PtuFile property) line_stop_mask (ptufile.PtuFile property) line_time (ptufile.PtuFile property) lines_in_frame (ptufile.PtuFile property)

list() (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrStore method) (tifffile.zarr.ZarrTiffStore method) list_dir() (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrStore method) (tifffile.zarr.ZarrTiffStore method) list_prefix() (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrStore method) (tifffile.zarr.ZarrTiffStore method) lock (czifile.CziFile property) (fbdfile.FbdFile property) (obffile.ObfFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (sdtfile.SdtFile property) (tifffile.FileHandle property) LOF (liffile.LifFileType attribute) (liffile.LifMemoryBlockType attribute) logger() (in module czifile) (in module roifile) (in module tifffile) LONG (tifffile.DATATYPE attribute) LONG8 (tifffile.DATATYPE attribute) LSB2MSB (tifffile.FILLORDER attribute) LSM (ptufile.PtuScannerType attribute) lsm_metadata (tifffile.TiffFile property) LSMIMAGE (oirfile.METADATA attribute) LUT (oirfile.METADATA attribute) LZMA (tifffile.COMPRESSION attribute) LZW (czifile.CziCompressionType attribute) (tifffile.COMPRESSION attribute)

M

MACRO (tifffile.FILETYPE attribute) main() (in module dnacurve) (in module dnacurve.web) (in module molmass) (in module molmass.web) MARKER (czifile.CziEventType attribute) MASK (tifffile.FILETYPE attribute) mask() (czifile.CziSubBlockSegmentData method) mass (molmass.Formula property) mass_charge_ratio() (in module molmass) mass_for_molarity() (molmass.Formula method) mass_from_moles() (molmass.Formula method) matlabstr2py() (in module tifffile) maxcache (czifile.CziFile property) MAXIOWORKERS (tifffile._TIFF property) MAXWORKERS (tifffile._TIFF property) maxworkers (tifffile.TiffPage property) MCL (ptufile.PtuScannerType attribute) mdgel_metadata (tifffile.TiffFile property) mean (molmass.Spectrum property) measurement_mode (ptufile.PhuFile property) (ptufile.PtuFile property) measurement_ndim (ptufile.PtuFile property) measurement_submode (ptufile.PhuFile property) (ptufile.PtuFile property) measurement_warnings (ptufile.PtuFile property) MEDIUM (roifile.ROI_POINT_SIZE attribute) MEM (liffile.LifMemoryBlockType attribute) memmap() (in module tifffile) memmap_array() (tifffile.FileHandle method) memmapped (czifile.CziFile property) (fbdfile.FbdFile property) (obffile.ObfFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (sdtfile.SdtFile property)

memory_block (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) METADATA (class in oirfile) metadata() (czifile.CziFile method) (czifile.CziSubBlockSegmentData method) metadata_offset (czifile.CziSubBlockSegmentData property) metadata_segment (czifile.CziFile property) metaseries_metadata (tifffile.TiffFile property) micromanager_metadata (tifffile.TiffFile property) MICROMETER (tifffile.RESUNIT attribute) MILLIMETER (tifffile.RESUNIT attribute) min_int_coord() (roifile.ImagejRoi static method) MINISBLACK (tifffile.PHOTOMETRIC attribute) MINISWHITE (tifffile.PHOTOMETRIC attribute) Model (class in dnacurve) molarity() (molmass.Formula method) molarity_to_ppm() (molmass.Formula method) moles() (molmass.Formula method) molmass.__version__ (in module molmass) molmass.AMINOACIDS (in module molmass) molmass.DEOXYNUCLEOTIDES (in module molmass) molmass.ELEMENTARY_CHARGE (in module molmass) molmass.elements.ELEMENTARY_CHARGE (in module molmass) molmass.GROUPS (in module molmass) molmass.NUCLEOTIDES (in module molmass) molmass.PREPROCESSORS (in module molmass) monoisotopic_mass (molmass.Formula property) MOSAIC (czifile.CziDimensionType attribute) mpp (czifile.CziImage property) (tifffile.TiffPageSeries property) MSB2LSB (tifffile.FILLORDER attribute) MULTI_SUBBLOCK (czifile.CziPyramidType attribute) mz (molmass.elements.Isotope property) (molmass.Formula property) (molmass.Isotope property)

N

name (czifile.CziFile property) (czifile.CziImage property) (dnacurve.CurvedDNA property) (fbdfile.FbdFile property) (liffile.LifFile property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (obffile.ObfFile property) (obffile.ObfStack property) (oirfile.OirFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (sdtfile.SdtFile property) (tifffile.FileHandle property) (tifffile.TiffFrame property) (tifffile.TiffPage property) (tifffile.TiffTag property) name_offset (czifile.CziAttachmentEntryA1 property) natural_sorted() (in module tifffile) nbytes (czifile.CziImage property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (obffile.ObfStack property) (oirfile.OirFile property) (oirfile.OirReference property) (ptufile.PtuFile property) (tifffile.TiffFrame property) (tifffile.TiffPage property) (tifffile.TiffPageSeries property) ndim (czifile.CziDirectoryEntryDV property) (czifile.CziImage property) (lfdfiles.BioradPic property) (lfdfiles.Ccp4Map property) (lfdfiles.FlieOut property) (lfdfiles.FliezDb2 property) (lfdfiles.FliezI16 property) (lfdfiles.FlimageBin property) (lfdfiles.FlimfastFlif property) (lfdfiles.GlobalsAscii property) (lfdfiles.GlobalsLif property) (lfdfiles.LfdFile property) (lfdfiles.RawPal property) (lfdfiles.SimfcsB64 property) (lfdfiles.SimfcsBh property) (lfdfiles.SimfcsBhz property) (lfdfiles.SimfcsBin property) (lfdfiles.SimfcsCyl property) (lfdfiles.SimfcsFit property) (lfdfiles.SimfcsI64 property) (lfdfiles.SimfcsInt property) (lfdfiles.SimfcsIntPhsMod property) (lfdfiles.SimfcsJrn property) (lfdfiles.SimfcsR64 property) (lfdfiles.SimfcsRef property) (lfdfiles.SimfcsVpl property) (lfdfiles.SimfcsVpp property) (lfdfiles.SimfcsZ64 property) (lfdfiles.Vaa3dRaw property) (lfdfiles.VistaIfi property) (lfdfiles.VistaIfli property) (lfdfiles.VistaTdflim property) (lfdfiles.VoxxMap property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (liffile.LifImageFrames property) (obffile.ObfStack property) (oirfile.OirFile property) (oirfile.OirReference property) (tifffile.TiffFrame property) (tifffile.TiffPage property) (tifffile.TiffPageSeries property) (tifffile.TiledSequence property)

ndims (ptufile.PtuFile property) NDPI_LE (tifffile._TIFF property) NDPI_TAGS (tifffile._TIFF property) ndpi_tags (tifffile.TiffPage property) NetpbmFile (class in netpbmfile) netpbmfile.__version__ (in module netpbmfile) NEUTRON (in module molmass) (in module molmass.elements) neutrons (molmass.Element property) (molmass.elements.Element property) next_page_offset (tifffile.TiffPages property) nih_metadata (tifffile.TiffFile property) nominal_mass (molmass.Formula property) nominalmass (molmass.Element property) (molmass.elements.Element property) NONE (czifile.CziPyramidType attribute) (roifile.ROI_OPTIONS attribute) (tifffile.COMPRESSION attribute) (tifffile.PREDICTOR attribute) (tifffile.RESUNIT attribute) normalize_shape() (ptufile.PtuWriter static method) NOROI (roifile.ROI_TYPE attribute) nullfunc() (in module tifffile) number_bins (ptufile.PtuFile property) number_bins_in_period (liffile.LifFlimImage property) (ptufile.PtuFile property) number_bins_max (ptufile.PtuFile property) number_channels (ptufile.PtuFile property) number_channels_max (ptufile.PtuFile property) number_histograms (ptufile.PhuFile property) number_images (ptufile.PtuFile property) number_lines (ptufile.PtuFile property) number_markers (ptufile.PtuFile property) number_photons (ptufile.PtuFile property) number_records (ptufile.PtuFile property) nuvu_metadata (tifffile.TiffFile property) nuvu_tags (tifffile.TiffPage property)

O

ObfFile (class in obffile) obffile.__version__ (in module obffile) obffile.FILE_EXTENSIONS (in module obffile) ObfFileError (class in obffile) ObfFileHeader (class in obffile) ObfSiUnit (class in obffile) ObfStack (class in obffile) ObfStackFooter (class in obffile) ObfStackHeader (class in obffile) ObfStackSequence (class in obffile) objective (czifile.CziImage property) offset (psdtags.PsdLayer property) (psdtags.PsdLayerMask property) (psdtags.PsdRectangle property) (psdtags.PsdVirtualMemoryArray property) OFILETYPE (class in tifffile) oib2oif() (in module oiffile) OibFileSystem (class in oiffile) OifFile (class in oiffile) oiffile.__version__ (in module oiffile) OifFileError (class in oiffile) OifFileSystem (class in oiffile) OirChannel (class in oirfile) OirFile (class in oirfile) oirfile.__version__ (in module oirfile) oirfile.FILE_EXTENSIONS (in module oirfile) OirFileError (class in oirfile) OirReference (class in oirfile) oligonucleotides() (in module dnacurve) OME (liffile.LifMemoryBlockType attribute) ome_metadata (tifffile.TiffFile property) OmeXml (class in tifffile) OmeXmlError (class in tifffile) open() (lfdfiles.BioradPic class method) (lfdfiles.Ccp4Map class method) (lfdfiles.FlieOut class method) (lfdfiles.FliezDb2 class method) (lfdfiles.FliezI16 class method) (lfdfiles.FlimageBin class method) (lfdfiles.FlimfastFlif class method) (lfdfiles.GlobalsAscii class method) (lfdfiles.GlobalsLif class method) (lfdfiles.LfdFile class method) (lfdfiles.RawPal class method) (lfdfiles.SimfcsB64 class method) (lfdfiles.SimfcsBh class method) (lfdfiles.SimfcsBhz class method) (lfdfiles.SimfcsBin class method) (lfdfiles.SimfcsCyl class method) (lfdfiles.SimfcsFit class method) (lfdfiles.SimfcsI64 class method) (lfdfiles.SimfcsInt class method) (lfdfiles.SimfcsIntPhsMod class method) (lfdfiles.SimfcsJrn class method) (lfdfiles.SimfcsR64 class method) (lfdfiles.SimfcsRef class method) (lfdfiles.SimfcsVpl class method) (lfdfiles.SimfcsVpp class method) (lfdfiles.SimfcsZ64 class method) (lfdfiles.Vaa3dRaw class method) (lfdfiles.VistaIfi class method) (lfdfiles.VistaIfli class method) (lfdfiles.VistaTdflim class method) (lfdfiles.VoxxMap class method) (tifffile.FileCache method) (tifffile.FileHandle method)

open_file() (oiffile.CompoundFile method) (oiffile.FileSystemAbc method) (oiffile.OibFileSystem method) (oiffile.OifFile method) (oiffile.OifFileSystem method) options (roifile.ImagejRoi attribute) ORIENTATION (class in tifffile) OSCILLOSCOPE (ptufile.PhuMeasurementSubMode attribute) OUTLINE (roifile.ROI_OPTIONS attribute) OVAL (roifile.ROI_TYPE attribute) OVERLAY (oirfile.METADATA attribute) overlay() (in module psdtags) OVERLAY_BACKGROUNDS (roifile.ROI_OPTIONS attribute) OVERLAY_BOLD (roifile.ROI_OPTIONS attribute) OVERLAY_LABELS (roifile.ROI_OPTIONS attribute) OVERLAY_NAMES (roifile.ROI_OPTIONS attribute) overwrite() (tifffile.TiffTag method) overwrite_description() (tifffile.TiffWriter method)

P

p_fit() (lfdfiles.SimfcsFit method) pack() (psdtags.PsdFormat method) pack_size() (psdtags.PsdFormat method) PACKBITS (tifffile.COMPRESSION attribute) packed (czifile.CziSegmentId property) PAGE (tifffile.CHUNKMODE attribute) (tifffile.FILETYPE attribute) page_shape (tifffile.StoredShape property) page_size (tifffile.StoredShape property) pages (tifffile.TiffPage property) (tifffile.TiffPageSeries property) PALETTE (tifffile.PHOTOMETRIC attribute) param_flags (psdtags.PsdLayerMask property) parent (liffile.LifFile property) parent_image (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) parse_filenames() (in module tifffile) parse_kwargs() (in module tifffile) Particle (class in molmass) (class in molmass.elements) path (tifffile.FileHandle property) path2coords() (roifile.ImagejRoi static method) PCK (ptufile.PqFileType attribute) PCO (ptufile.PqFileType attribute) pdb() (dnacurve.CurvedDNA method) peak (molmass.Spectrum property) pformat() (in module tifffile) PFS (ptufile.PqFileType attribute) PHASE (czifile.CziDimensionType attribute) philips_metadata (tifffile.TiffFile property) PHOTOMETRIC (class in tifffile) PHOTOMETRIC_SAMPLES (tifffile._TIFF property) photometric_samples (tifffile.StoredShape property) PHU (ptufile.PqFileType attribute) PhuFile (class in ptufile) PhuMeasurementMode (class in ptufile) PhuMeasurementSubMode (class in ptufile) PI_E710 (ptufile.PtuScannerType attribute) PI_E725 (ptufile.PtuScannerType attribute) PI_E727 (ptufile.PtuScannerType attribute) PI_LINEWBS (ptufile.PtuScannerType attribute) PicoHarpT2 (ptufile.PtuRecordType attribute) PicoHarpT3 (ptufile.PtuRecordType attribute) pilatus_metadata (tifffile.TiffFile property) pixel_time (liffile.LifFlimImage property) (ptufile.PtuFile property) pixels_in_frame (ptufile.PtuFile property) pixels_in_line (ptufile.PtuFile property) pixeltype (czifile.CziImage property) PIXTIFF (tifffile.COMPRESSION attribute) PLANARCONFIG (class in tifffile) planarconfig (tifffile.StoredShape property) PLANE (tifffile.CHUNKMODE attribute) plot() (dnacurve.CurvedDNA method) (fbdfile.FbdFile method) (ptufile.PhuFile method) (ptufile.PtuFile method) (roifile.ImagejRoi method) pmax (fbdfile.FbdFile property) PNG (liffile.LifMemoryBlockType attribute) (tifffile.COMPRESSION attribute) POINT (ptufile.PtuMeasurementSubMode attribute) (roifile.ROI_TYPE attribute) point_size (roifile.ImagejRoi property) point_type (roifile.ImagejRoi property) PoirFile (class in oirfile) POLYGON (roifile.ROI_TYPE attribute) POLYLINE (roifile.ROI_TYPE attribute) POSITRON (in module molmass) (in module molmass.elements) ppm_to_molarity() (molmass.Formula method) PQDAT (ptufile.PqFileType attribute) PqFile (class in ptufile) PqFileError (class in ptufile) PqFileType (class in ptufile) PQRES (ptufile.PqFileType attribute)

PQUNI (ptufile.PqFileType attribute) PREDICTOR (class in tifffile) PREDICTORS (tifffile._TIFF property) print() (tifffile.Timer method) product() (in module tifffile) PROMPT_BEFORE_DELETING (roifile.ROI_OPTIONS attribute) properties (roifile.ImagejRoi property) PROTON (in module molmass) (in module molmass.elements) protons (molmass.Element property) (molmass.elements.Element property) PsdBlendMode (class in psdtags) PsdBoolean (class in psdtags) PsdBytesBlock (class in psdtags) PsdChannel (class in psdtags) PsdChannelId (class in psdtags) PsdClippingType (class in psdtags) PsdColorBlock (class in psdtags) PsdColorSpaceType (class in psdtags) PsdColorType (class in psdtags) PsdCompressionType (class in psdtags) PsdEmpty (class in psdtags) PsdExposure (class in psdtags) PsdFilterMask (class in psdtags) PsdFormat (class in psdtags) PsdImageMode (class in psdtags) PsdInteger (class in psdtags) PsdKey (class in psdtags) PsdKeyABC (class in psdtags) PsdLayer (class in psdtags) PsdLayerFlag (class in psdtags) PsdLayerMask (class in psdtags) PsdLayerMaskFlag (class in psdtags) PsdLayerMaskParameterFlag (class in psdtags) PsdLayers (class in psdtags) PsdMetadataSetting (class in psdtags) PsdMetadataSettings (class in psdtags) PsdPascalString (class in psdtags) PsdPascalStringBlock (class in psdtags) PsdPascalStringsBlock (class in psdtags) PsdPatterns (class in psdtags) PsdPoint (class in psdtags) PsdRectangle (class in psdtags) PsdReferencePoint (class in psdtags) PsdResourceBlockABC (class in psdtags) PsdResourceId (class in psdtags) PsdSectionDividerSetting (class in psdtags) PsdSectionDividerType (class in psdtags) PsdSheetColorSetting (class in psdtags) PsdString (class in psdtags) PsdStringBlock (class in psdtags) PsdStringsBlock (class in psdtags) psdtags.__version__ (in module psdtags) psdtags.REPR_MAXLEN (in module psdtags) PsdTextEngineData (class in psdtags) PsdThumbnailBlock (class in psdtags) PsdUnicodeString (class in psdtags) PsdUnknown (class in psdtags) PsdUserMask (class in psdtags) PsdVersionBlock (class in psdtags) PsdVirtualMemoryArray (class in psdtags) PsdVirtualMemoryArrayList (class in psdtags) PsdWord (class in psdtags) Ptu (class in ptufile.numcodecs) PTU (ptufile.PqFileType attribute) PtuFile (class in ptufile) ptufile.__version__ (in module ptufile) ptufile.FILE_EXTENSIONS (in module ptufile) PtuHwFeatures (class in ptufile) PtuMeasurementMode (class in ptufile) PtuMeasurementSubMode (class in ptufile) PtuMeasurementWarnings (class in ptufile) PtuRecordType (class in ptufile) PtuScanDirection (class in ptufile) PtuScannerType (class in ptufile) PtuStopReason (class in ptufile) PtuWriter (class in ptufile)

Q

qpi_metadata (tifffile.TiffFile property)

R

range (molmass.Spectrum property) RATIONAL (tifffile.DATATYPE attribute) rational() (in module tifffile) ravel_multi_index() (liffile.LifImageFrames method) RawPal (class in lfdfiles) read() (liffile.LifMemoryBlock method) (psdtags.PsdBoolean class method) (psdtags.PsdBytesBlock class method) (psdtags.PsdChannel class method) (psdtags.PsdColorBlock class method) (psdtags.PsdEmpty class method) (psdtags.PsdExposure class method) (psdtags.PsdFilterMask class method) (psdtags.PsdFormat method) (psdtags.PsdInteger class method) (psdtags.PsdKeyABC class method) (psdtags.PsdLayer class method) (psdtags.PsdLayerMask class method) (psdtags.PsdLayers class method) (psdtags.PsdMetadataSetting class method) (psdtags.PsdMetadataSettings class method) (psdtags.PsdPascalString class method) (psdtags.PsdPascalStringBlock class method) (psdtags.PsdPascalStringsBlock class method) (psdtags.PsdPatterns class method) (psdtags.PsdReferencePoint class method) (psdtags.PsdResourceBlockABC class method) (psdtags.PsdSectionDividerSetting class method) (psdtags.PsdSheetColorSetting class method) (psdtags.PsdString class method) (psdtags.PsdStringBlock class method) (psdtags.PsdStringsBlock class method) (psdtags.PsdTextEngineData class method) (psdtags.PsdThumbnailBlock class method) (psdtags.PsdUnicodeString class method) (psdtags.PsdUnknown class method) (psdtags.PsdUserMask class method) (psdtags.PsdVersionBlock class method) (psdtags.PsdVirtualMemoryArray class method) (psdtags.PsdVirtualMemoryArrayList class method) (psdtags.PsdWord class method) (psdtags.TiffImageResources class method) (psdtags.TiffImageSourceData class method) (tifffile.FileCache method) (tifffile.FileHandle method) read_array() (liffile.LifMemoryBlock method) (tifffile.FileHandle method) read_dimension_entries() (czifile.CziDirectoryEntryDV method) read_file_position() (czifile.CziAttachmentEntryA1 static method) (czifile.CziDirectoryEntryDV static method)

read_gdal_structural_metadata() (in module tifffile) read_image() (psdtags.PsdChannel method) read_micromanager_metadata() (in module tifffile) read_ndtiff_index() (in module tifffile) read_psdblocks() (in module psdtags) read_psdtags() (in module psdtags) read_record() (tifffile.FileHandle method) read_records() (ptufile.PtuFile method) read_scanimage_metadata() (in module tifffile) read_segment_data() (czifile.CziAttachmentEntryA1 method) (czifile.CziDirectoryEntryDV method) read_segments() (tifffile.FileHandle method) read_size() (psdtags.PsdFormat method) read_tifftag() (in module psdtags) readinto() (liffile.LifMemoryBlock method) (tifffile.FileHandle method) record_offset (ptufile.PtuFile property) record_type (ptufile.PtuFile property) RECT (roifile.ROI_TYPE attribute) REDUCEDIMAGE (tifffile.FILETYPE attribute) reference (oirfile.OirFile property) refine_settings() (fbdfile.FbdFile method) register_codec() (in module ptufile.numcodecs) (in module tifffile.numcodecs) (in module tifffile.zarr) repeat_nd() (in module tifffile) reshape_axes() (in module tifffile) reshape_nd() (in module tifffile) resolution (tifffile.TiffFrame property) (tifffile.TiffPage property) resolutionunit (tifffile.TiffFrame property) (tifffile.TiffPage property) response() (in module dnacurve.web) (in module molmass.web) RESUNIT (class in tifffile) RGB (tifffile.PHOTOMETRIC attribute) ROI_OPTIONS (class in roifile) ROI_POINT_SIZE (class in roifile) ROI_POINT_TYPE (class in roifile) ROI_SUBTYPE (class in roifile) ROI_TYPE (class in roifile) roifile.__version__ (in module roifile) roifile.ROI_COLOR_NONE (in module roifile) roiread() (in module roifile) roitype (roifile.ImagejRoi attribute) roiwrite() (in module roifile) root (tifffile.TiffFile property) ROTATED_RECT (roifile.ROI_SUBTYPE attribute) ROTATION (czifile.CziDimensionType attribute)

S

SAMPLE_DTYPES (tifffile._TIFF property) SAMPLEFORMAT (class in tifffile) samples (tifffile.StoredShape property) save() (czifile.CziAttachmentSegmentData method) save_attachments() (czifile.CziFile method) saveas_oif() (oiffile.OibFileSystem method) SBYTE (tifffile.DATATYPE attribute) scale (czifile.CziDirectoryEntryDV property) SCALE_LABELS (roifile.ROI_OPTIONS attribute) SCALE_STROKE_WIDTH (roifile.ROI_OPTIONS attribute) SCANBOX (ptufile.PtuScannerType attribute) scanimage_metadata (tifffile.TiffFile property) scanner (ptufile.PtuFile property) scanner_line_add (fbdfile.FbdFile property) SCENE (czifile.CziDimensionType attribute) scene_indices (czifile.CziImage property) scenes (czifile.CziFile property) schema_type (czifile.CziAttachmentEntryA1 property) (czifile.CziDimensionEntryDV1 property) (czifile.CziDirectoryEntryDV property) scn_metadata (tifffile.TiffFile property) SdtFile (class in sdtfile) sdtfile.__version__ (in module sdtfile) seek() (tifffile.FileHandle method) seekable() (tifffile.FileHandle method) segment (czifile.CziAttachmentDirectorySegmentData property) (czifile.CziAttachmentSegmentData property) (czifile.CziDeletedSegmentData property) (czifile.CziFileHeaderSegmentData property) (czifile.CziMetadataSegmentData property) (czifile.CziSegmentData property) (czifile.CziSubBlockDirectorySegmentData property) (czifile.CziSubBlockSegmentData property) (czifile.CziUnknownSegmentData property) segments() (czifile.CziFile method) (tifffile.TiffPage method) sem_metadata (tifffile.TiffFile property) SEPARATE (tifffile.PLANARCONFIG attribute) SEPARATED (tifffile.PHOTOMETRIC attribute) SEQ (ptufile.PhuMeasurementSubMode attribute) Sequence (class in dnacurve) series (oiffile.OifFile property) SERIES (tifffile._TIFF property) series (tifffile.TiffFile property) set() (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrStore method) (tifffile.zarr.ZarrTiffStore method) set_keyframe() (tifffile.TiffPages method) set_lock() (czifile.CziFile method) (fbdfile.FbdFile method) (obffile.ObfFile method) (ptufile.PhuFile method) (ptufile.PqFile method) (ptufile.PtuFile method) (sdtfile.SdtFile method) (tifffile.FileHandle method) SettingsFile (class in oiffile) SetupBlock (class in sdtfile) sflim_decode() (in module fbdfile) shape (czifile.CziImage property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (liffile.LifImageFrames property) (netpbmfile.NetpbmFile property) (obffile.ObfStack property) (oiffile.OifFile property) (oirfile.OirFile property) (oirfile.OirReference property) (psdtags.PsdLayer property) (psdtags.PsdLayerMask property) (psdtags.PsdLayers property) (psdtags.PsdRectangle property) (psdtags.PsdVirtualMemoryArray property) (ptufile.PtuFile property) (tifffile.StoredShape property) (tifffile.TiffFrame property) (tifffile.TiffPageSeries property) shaped (tifffile.TiffFrame property) shaped_description (tifffile.TiffPage property) shaped_metadata (tifffile.TiffFile property) SHORT (tifffile.DATATYPE attribute) show() (lfdfiles.BioradPic method) (lfdfiles.Ccp4Map method) (lfdfiles.FlieOut method) (lfdfiles.FliezDb2 method) (lfdfiles.FliezI16 method) (lfdfiles.FlimageBin method) (lfdfiles.FlimfastFlif method) (lfdfiles.GlobalsAscii method) (lfdfiles.GlobalsLif method) (lfdfiles.LfdFile method) (lfdfiles.RawPal method) (lfdfiles.SimfcsB64 method) (lfdfiles.SimfcsBh method) (lfdfiles.SimfcsBhz method) (lfdfiles.SimfcsBin method) (lfdfiles.SimfcsCyl method) (lfdfiles.SimfcsFit method) (lfdfiles.SimfcsI64 method) (lfdfiles.SimfcsInt method) (lfdfiles.SimfcsIntPhsMod method) (lfdfiles.SimfcsJrn method) (lfdfiles.SimfcsR64 method) (lfdfiles.SimfcsRef method) (lfdfiles.SimfcsVpl method) (lfdfiles.SimfcsVpp method) (lfdfiles.SimfcsZ64 method) (lfdfiles.Vaa3dRaw method) (lfdfiles.VistaIfi method) (lfdfiles.VistaIfli method) (lfdfiles.VistaTdflim method) (lfdfiles.VoxxMap method) SHOW_LABELS (roifile.ROI_OPTIONS attribute) SimfcsB64 (class in lfdfiles) simfcsb64_write() (in module lfdfiles) SimfcsBh (class in lfdfiles) SimfcsBhz (class in lfdfiles) SimfcsBin (class in lfdfiles) SimfcsCyl (class in lfdfiles) SimfcsFit (class in lfdfiles)

SimfcsGpSeries (class in lfdfiles) SimfcsI64 (class in lfdfiles) simfcsi64_write() (in module lfdfiles) SimfcsInt (class in lfdfiles) SimfcsIntPhsMod (class in lfdfiles) SimfcsJrn (class in lfdfiles) SimfcsR64 (class in lfdfiles) simfcsr64_write() (in module lfdfiles) SimfcsRaw (in module lfdfiles) SimfcsRef (class in lfdfiles) SimfcsVpl (class in lfdfiles) SimfcsVpp (class in lfdfiles) SimfcsZ64 (class in lfdfiles) simfcsz64_write() (in module lfdfiles) SINGLE_SUBBLOCK (czifile.CziPyramidType attribute) sis_metadata (tifffile.TiffFile property) size (czifile.CziDirectoryEntryDV property) (czifile.CziImage property) (lfdfiles.BioradPic property) (lfdfiles.Ccp4Map property) (lfdfiles.FlieOut property) (lfdfiles.FliezDb2 property) (lfdfiles.FliezI16 property) (lfdfiles.FlimageBin property) (lfdfiles.FlimfastFlif property) (lfdfiles.GlobalsAscii property) (lfdfiles.GlobalsLif property) (lfdfiles.LfdFile property) (lfdfiles.RawPal property) (lfdfiles.SimfcsB64 property) (lfdfiles.SimfcsBh property) (lfdfiles.SimfcsBhz property) (lfdfiles.SimfcsBin property) (lfdfiles.SimfcsCyl property) (lfdfiles.SimfcsFit property) (lfdfiles.SimfcsI64 property) (lfdfiles.SimfcsInt property) (lfdfiles.SimfcsIntPhsMod property) (lfdfiles.SimfcsJrn property) (lfdfiles.SimfcsR64 property) (lfdfiles.SimfcsRef property) (lfdfiles.SimfcsVpl property) (lfdfiles.SimfcsVpp property) (lfdfiles.SimfcsZ64 property) (lfdfiles.Vaa3dRaw property) (lfdfiles.VistaIfi property) (lfdfiles.VistaIfli property) (lfdfiles.VistaTdflim property) (lfdfiles.VoxxMap property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (obffile.ObfStack property) (oirfile.OirFile property) (oirfile.OirReference property) (ptufile.PtuFile property) (tifffile.FileHandle property) (tifffile.StoredShape property) (tifffile.TiffFrame property) (tifffile.TiffPage property) (tifffile.TiffPageSeries property) sizeformat (psdtags.PsdFormat property) sizes (czifile.CziImage property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) (liffile.LifImageFrames property) (obffile.ObfStack property) (oirfile.OirFile property) (oirfile.OirReference property) (ptufile.PtuFile property) (tifffile.TiffFrame property) (tifffile.TiffPage property) (tifffile.TiffPageSeries property) slices() (tifffile.TiledSequence method) SLONG (tifffile.DATATYPE attribute) SLONG8 (tifffile.DATATYPE attribute) SMALL (roifile.ROI_POINT_SIZE attribute) spc_bin_hdr_ext (sdtfile.SetupBlock property) Spectrum (class in molmass) spectrum() (molmass.Formula method) SpectrumEntry (class in molmass) SPLINE_FIT (roifile.ROI_OPTIONS attribute) split_charge() (in module molmass) SPQR (ptufile.PqFileType attribute) squeezed (tifffile.StoredShape property) SRATIONAL (tifffile.DATATYPE attribute) SSHORT (tifffile.DATATYPE attribute) stacks (obffile.ObfFile property) start (czifile.CziImage property) start() (tifffile.Timer method) start_coordinate (czifile.CziDirectoryEntryDV property) stk_metadata (tifffile.TiffFile property) stop() (tifffile.Timer method) stop_reason (ptufile.PtuFile property) storage_size (czifile.CziDirectoryEntryDV property) StoredShape (class in tifffile) storedsize (czifile.CziImage property) streak_metadata (tifffile.TiffFile property) STRILE (tifffile.CHUNKMODE attribute) string (dnacurve.Sequence property) strptime() (in module tifffile) SUB_PIXEL_RESOLUTION (roifile.ROI_OPTIONS attribute) subblock_directory (czifile.CziFile property) subblock_entry_offset (czifile.CziDirectoryEntryDV property) subblocks() (czifile.CziFile method) subpixelrect (roifile.ImagejRoi property) subpixelresolution (roifile.ImagejRoi property) subtype (roifile.ImagejRoi attribute) superimpose_matrix() (in module dnacurve) supports_deletes (tifffile.zarr.ZarrFileSequenceStore property) (tifffile.zarr.ZarrStore property) (tifffile.zarr.ZarrTiffStore property) supports_listing (tifffile.zarr.ZarrFileSequenceStore property) (tifffile.zarr.ZarrStore property) (tifffile.zarr.ZarrTiffStore property) supports_writes (tifffile.zarr.ZarrFileSequenceStore property) (tifffile.zarr.ZarrStore property) (tifffile.zarr.ZarrTiffStore property) syncrate (ptufile.PtuFile property) SYSTEMRAW (czifile.CziCompressionType attribute)

T

T2 (ptufile.PtuMeasurementMode attribute) T2_RECORD_DTYPE (in module ptufile) T3 (ptufile.PtuMeasurementMode attribute) T3_RECORD_DTYPE (in module ptufile) TAGS (tifffile._TIFF property) tcspc_resolution (liffile.LifFlimImage property) (ptufile.PhuFile property) (ptufile.PtuFile property) tell() (tifffile.FileHandle method) TEXT (roifile.ROI_SUBTYPE attribute) thumbnail (oirfile.OirFile property) thumbnail() (psdtags.TiffImageResources method) TIF (liffile.LifMemoryBlockType attribute) Tiff (class in tifffile.numcodecs) (class in tifffile.zarr) TIFF (in module tifffile) TiffFile (class in tifffile) tifffile.__version__ (in module tifffile) TiffFileError (class in tifffile) TiffFormat (class in tifffile) TiffFrame (class in tifffile) TiffImageResources (class in psdtags) TiffImageSourceData (class in psdtags) TiffPage (class in tifffile) TiffPages (class in tifffile) TiffPageSeries (class in tifffile) TiffReader (in module tifffile) TiffSequence (class in tifffile) TiffSeries (class in tifffile) TiffTag (class in tifffile) tifftag() (psdtags.TiffImageResources method) (psdtags.TiffImageSourceData method) TiffTagRegistry (class in tifffile) TiffTags (class in tifffile) TiffWriter (class in tifffile) tile (tifffile.TiffFrame property) (tifffile.TiffPage property) TiledSequence (class in tifffile) tilescan (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) TIME (czifile.CziDimensionType attribute) TimeHarp260NT2 (ptufile.PtuRecordType attribute) TimeHarp260NT3 (ptufile.PtuRecordType attribute) TimeHarp260PT2 (ptufile.PtuRecordType attribute) TimeHarp260PT3 (ptufile.PtuRecordType attribute) Timer (class in tifffile) TIMER_CHANGE (czifile.CziEventType attribute) timestamps (czifile.CziFile property) (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property) TINY (roifile.ROI_POINT_SIZE attribute) title (psdtags.PsdLayer property) (psdtags.PsdThumbnailBlock property) to_dict() (tifffile.zarr.Tiff method) tobytes() (psdtags.PsdBlendMode method) (psdtags.PsdBoolean method) (psdtags.PsdBytesBlock method) (psdtags.PsdChannel method) (psdtags.PsdColorBlock method) (psdtags.PsdEmpty method) (psdtags.PsdExposure method) (psdtags.PsdFilterMask method) (psdtags.PsdInteger method) (psdtags.PsdKey method) (psdtags.PsdKeyABC method) (psdtags.PsdLayer method) (psdtags.PsdLayerMask method) (psdtags.PsdLayers method) (psdtags.PsdMetadataSettings method) (psdtags.PsdPascalStringBlock method) (psdtags.PsdPascalStringsBlock method) (psdtags.PsdPatterns method) (psdtags.PsdReferencePoint method) (psdtags.PsdResourceBlockABC method) (psdtags.PsdSectionDividerSetting method) (psdtags.PsdSheetColorSetting method) (psdtags.PsdString method) (psdtags.PsdStringBlock method) (psdtags.PsdStringsBlock method) (psdtags.PsdTextEngineData method) (psdtags.PsdThumbnailBlock method) (psdtags.PsdUnknown method) (psdtags.PsdUserMask method) (psdtags.PsdVersionBlock method) (psdtags.PsdWord method) (psdtags.TiffImageResources method) (psdtags.TiffImageSourceData method) (roifile.ImagejRoi method)

tofile() (roifile.ImagejRoi method) tostring() (tifffile.OmeXml method) total (molmass.Composition property) totiff() (lfdfiles.BioradPic method) (lfdfiles.Ccp4Map method) (lfdfiles.FlieOut method) (lfdfiles.FliezDb2 method) (lfdfiles.FliezI16 method) (lfdfiles.FlimageBin method) (lfdfiles.FlimfastFlif method) (lfdfiles.GlobalsAscii method) (lfdfiles.GlobalsLif method) (lfdfiles.LfdFile method) (lfdfiles.RawPal method) (lfdfiles.SimfcsB64 method) (lfdfiles.SimfcsBh method) (lfdfiles.SimfcsBhz method) (lfdfiles.SimfcsBin method) (lfdfiles.SimfcsCyl method) (lfdfiles.SimfcsFit method) (lfdfiles.SimfcsI64 method) (lfdfiles.SimfcsInt method) (lfdfiles.SimfcsIntPhsMod method) (lfdfiles.SimfcsJrn method) (lfdfiles.SimfcsR64 method) (lfdfiles.SimfcsRef method) (lfdfiles.SimfcsVpl method) (lfdfiles.SimfcsVpp method) (lfdfiles.SimfcsZ64 method) (lfdfiles.Vaa3dRaw method) (lfdfiles.VistaIfi method) (lfdfiles.VistaIfli method) (lfdfiles.VistaTdflim method) (lfdfiles.VoxxMap method) TRACED (roifile.ROI_TYPE attribute) transferfunction (tifffile.TiffPage property) transpose_axes() (in module tifffile) treeindex (tifffile.TiffFrame property) (tifffile.TiffPage property) TRES (ptufile.PhuMeasurementSubMode attribute) TRIGGER (czifile.CziEventType attribute) tvips_metadata (tifffile.TiffFile property)

U

UINT (tifffile.SAMPLEFORMAT attribute) UNASSALPHA (tifffile.EXTRASAMPLE attribute) UNCOMPRESSED (czifile.CziCompressionType attribute) UNDEFINED (roifile.ROI_SUBTYPE attribute) (tifffile.DATATYPE attribute) (tifffile.FILETYPE attribute) UNICODE (tifffile.DATATYPE attribute) unique_oligos() (in module dnacurve) units_per_sample (fbdfile.FbdFile property) UNKNOWN (czifile.CziCompressionType attribute) (czifile.CziContentFileType attribute) (czifile.CziDimensionType attribute) (czifile.CziEventType attribute) (czifile.CziPixelType attribute) (czifile.CziPyramidType attribute) (czifile.CziSegmentId attribute) (liffile.LifMemoryBlockType attribute) (ptufile.PhuMeasurementMode attribute) (ptufile.PhuMeasurementSubMode attribute) (ptufile.PtuMeasurementMode attribute) (ptufile.PtuMeasurementSubMode attribute) (ptufile.PtuScannerType attribute) (roifile.ROI_POINT_SIZE attribute) (roifile.ROI_POINT_TYPE attribute) (roifile.ROI_SUBTYPE attribute) (roifile.ROI_TYPE attribute)

UNKNOWN_14 (roifile.ROI_OPTIONS attribute) UNKNOWN_15 (roifile.ROI_OPTIONS attribute) UNPREDICTORS (tifffile._TIFF property) unravel_index() (liffile.LifImageFrames method) UNSPECIFIED (tifffile.EXTRASAMPLE attribute) update() (tifffile.TiffTagRegistry method) update_kwargs() (in module tifffile) use_xarray (ptufile.PtuFile property) useframes (tifffile.TiffPages property) utf16 (psdtags.PsdFormat property) (roifile.ImagejRoi property) uuid (liffile.LifFlimImage property) (liffile.LifImage property) (liffile.LifImageABC property)

V

Vaa3dRaw (class in lfdfiles) vaa3draw_write() (in module lfdfiles) validate() (molmass.Element method) (molmass.elements.Element method) (tifffile.OmeXml static method) validate_jhove() (in module tifffile) value (tifffile.TiffTag property) valuebytecount (tifffile.TiffTag property) valueof() (tifffile.TiffTags method) values() (liffile.LifImageFrames method) (molmass.Composition method) (molmass.Spectrum method) (tifffile.TiffTags method)

VIEW (czifile.CziDimensionType attribute) VistaIfi (class in lfdfiles) VistaIfli (class in lfdfiles) VistaTdflim (class in lfdfiles) VOID (tifffile.SAMPLEFORMAT attribute) VoxxMap (class in lfdfiles) voxxmap_write() (in module lfdfiles)

W

WEBP (tifffile.COMPRESSION attribute) WIDTH (czifile.CziDimensionType attribute) writable (czifile.CziFile property) (fbdfile.FbdFile property) (obffile.ObfFile property) (ptufile.PhuFile property) (ptufile.PqFile property) (ptufile.PtuFile property) (sdtfile.SdtFile property) writable() (tifffile.FileHandle method) write() (dnacurve.Model method) (dnacurve.Sequence method) (netpbmfile.NetpbmFile method) (psdtags.PsdBlendMode method) (psdtags.PsdBoolean method) (psdtags.PsdBytesBlock method) (psdtags.PsdChannel method) (psdtags.PsdColorBlock method) (psdtags.PsdEmpty method) (psdtags.PsdExposure method) (psdtags.PsdFilterMask method) (psdtags.PsdFormat method) (psdtags.PsdInteger method) (psdtags.PsdKey method) (psdtags.PsdKeyABC method) (psdtags.PsdLayer method) (psdtags.PsdLayerMask method) (psdtags.PsdLayers method) (psdtags.PsdMetadataSetting method) (psdtags.PsdMetadataSettings method) (psdtags.PsdPascalString method) (psdtags.PsdPascalStringBlock method) (psdtags.PsdPascalStringsBlock method) (psdtags.PsdPatterns method) (psdtags.PsdReferencePoint method) (psdtags.PsdResourceBlockABC method) (psdtags.PsdSectionDividerSetting method) (psdtags.PsdSheetColorSetting method) (psdtags.PsdString method) (psdtags.PsdStringBlock method) (psdtags.PsdStringsBlock method) (psdtags.PsdTextEngineData method) (psdtags.PsdThumbnailBlock method) (psdtags.PsdUnicodeString method) (psdtags.PsdUnknown method) (psdtags.PsdUserMask method) (psdtags.PsdVersionBlock method) (psdtags.PsdVirtualMemoryArray method) (psdtags.PsdVirtualMemoryArrayList method) (psdtags.PsdWord method) (psdtags.TiffImageResources method) (psdtags.TiffImageSourceData method) (ptufile.PtuWriter method) (tifffile.FileCache method) (tifffile.FileHandle method) (tifffile.TiffWriter method)

write_array() (tifffile.FileHandle method) write_csv() (dnacurve.CurvedDNA method) write_empty() (tifffile.FileHandle method) write_fsspec() (tifffile.zarr.ZarrFileSequenceStore method) (tifffile.zarr.ZarrTiffStore method) write_key() (psdtags.PsdFormat method) write_pdb() (dnacurve.CurvedDNA method) write_psdblocks() (in module psdtags) write_psdtags() (in module psdtags) write_signature() (psdtags.PsdFormat method) write_size() (psdtags.PsdFormat method)

X

XLCF (liffile.LifFileType attribute) XLEF (liffile.LifFileType attribute) XLIF (liffile.LifFileType attribute) XLLF (liffile.LifFileType attribute) xml2dict() (in module liffile) (in module tifffile)

xml_element (czifile.CziFile property) xml_header() (liffile.LifFile method) xml_metadata (oirfile.OirFile property) XXL (roifile.ROI_POINT_SIZE attribute) XXXL (roifile.ROI_POINT_SIZE attribute) XY (ptufile.PtuScanDirection attribute) XZ (ptufile.PtuScanDirection attribute)

Y

YCBCR (tifffile.PHOTOMETRIC attribute)

YZ (ptufile.PtuScanDirection attribute)

Z

ZarrFileSequenceStore (class in tifffile.zarr) ZarrStore (class in tifffile.zarr) ZarrTiffStore (class in tifffile.zarr) ZERO_TRANSPARENT (roifile.ROI_OPTIONS attribute) ZIP (czifile.CziContentFileType attribute) ZIP_COMP (czifile.CziContentFileType attribute) ZISRAW (czifile.CziContentFileType attribute) ZISRAWATTACH (czifile.CziSegmentId attribute)

ZISRAWATTDIR (czifile.CziSegmentId attribute) ZISRAWDIRECTORY (czifile.CziSegmentId attribute) ZISRAWFILE (czifile.CziSegmentId attribute) ZISRAWMETADATA (czifile.CziSegmentId attribute) ZISRAWSUBBLOCK (czifile.CziSegmentId attribute) ZSTD (czifile.CziCompressionType attribute) (tifffile.COMPRESSION attribute) ZSTDHDR (czifile.CziCompressionType attribute)